Transposable elements occur more frequently in autism-risk genes: Implications for the role of genomic instability in autism
This publication is included in the Autistic Autism Scholarship Project. one author of this publication is identified as autistic in the project.
About the autistic author markerWilliams, E., Casanova, M., Switala, A., Li, H., & Qiu, M. (2013). Transposable elements occur more frequently in autism-risk genes: Implications for the role of genomic instability in autism. Translational Neuroscience, 4(2), 172-202. https://doi.org/10.2478/s13380-013-0113-6
This publication is integrated into AutiHub through:
Authors
Abstract
Abstract An extremely large number of genes have been associated with autism. The functions of these genes span numerous domains and prove challenging in the search for commonalities underlying the conditions. In this study, we instead looked at characteristics of the genes themselves, specifically in the nature of their transposable element content. Utilizing available sequence databases, we compared occurrence of transposons in autismrisk genes to randomized controls and found that transposable content was significantly greater in our autism group. These results suggest a relationship between transposable element content and autism-risk genes and have implications for the stability of those genomic regions.
Bibliography cited by this reference
Cited references are imported from external metadata sources when they are available. The list may be partial.
Cited bibliography overview
These indicators describe the bibliography cited by this publication. An author name is counted each time it appears in one cited reference, so the same person can be counted more than once. Names not yet linked to an author already present in AutiHub are treated as unknown, not as non-autistic. Last computed: 14 Sep 2026 14:22.
- With a DOI
- 25
- Without a DOI, from raw bibliography text
- 0
- References with detected author names
- 24 / 25 (96.0%)
- Without detected author names
- 1
- Without a structured title
- 0
- Without a stable identifier
- 0
- References with raw author names still to review
- 0
- References with external metadata lookup issues
- 0
- From DOI or external metadata
- 434
- From validated raw bibliography text
- 0
- Raw names already validated
- 0
- Raw names still to review
- 0
-
Youhong Liu , Janet M. Hock , Rebecca J. Van Beneden , Xiong Li (2014). EXPRESSION OF CONCERN: Aberrant overexpression of FOXM1 transcription factor plays a critical role in lung carcinogenesis induced by low doses of arsenic . Molecular Carcinogenesis, 53(5), 380-391. Wiley.OpenAlex
-
M. Thomas-Chollier , O. Sand , J.-V. Turatsinze , R. Janky , M. Defrance , E. Vervisch et al. (2008). RSAT: regulatory sequence analysis tools . Nucleic Acids Research, 36(Web Server), W119-W127. Oxford University Press (OUP).OpenAlex OpenCitations
-
R. Keith Slotkin , Robert Martienssen (2007). Transposable elements and the epigenetic regulation of the genome . Nature Reviews Genetics, 8(4), 272-285. Springer Science and Business Media LLC.OpenAlex OpenCitations
-
Asaf Levy , Noa Sela , Gil Ast (2008). TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates . Nucleic Acids Research, 36(suppl_1), D47-D52. Oxford University Press (OUP).OpenAlex OpenCitations
-
William McGinnis , Antony W. Shermoen , Steven K. Beckendorf (1983). A transposable element inserted just 5′ to a Drosophila glue protein gene alters gene expression and chromatin structure . Cell, 34(1), 75-84. Elsevier BV.OpenAlex OpenCitations
-
Jian Yuan , Mintie Pu , Zhiguo Zhang , Zhenkun Lou (2009). Histone H3-K56 acetylation is important for genomic stability in mammals . Cell Cycle, 8(11), 1747-1753. Informa UK Limited.Type: Article DOI: 10.4161/cc.8.11.8620 10.4161/cc.8.12.8965OpenCitations
-
Mayada Tassabehji , Tom Strachan , Michael Anderson , R. Duncan Campbell , Simon Collier , Majlinda Lako (1994). Identification of a novel family of human endogenous retroviruses and characterization of one family member, HERV-K(C4), located in the complement C4 gene cluster . Nucleic Acids Research, 22(24), 5211-5217. Oxford University Press (OUP).OpenAlex OpenCitations
-
Santhosh Girirajan , Megan Y. Dennis , Carl Baker , Maika Malig , Bradley P. Coe , Catarina D. Campbell et al. (2013). Refinement and Discovery of New Hotspots of Copy-Number Variation Associated with Autism Spectrum Disorder . The American Journal of Human Genetics, 92(2), 221-237. Elsevier BV.OpenAlex OpenCitations
-
Mark J. Millan (2013). An epigenetic framework for neurodevelopmental disorders: From pathogenesis to potential therapy . Neuropharmacology, 68, 2-82. Elsevier BV.OpenAlex OpenCitations
-
Hennady P. Shulha (2012). Epigenetic Signatures of Autism . Archives of General Psychiatry, 69(3), 314. American Medical Association (AMA).OpenAlex OpenCitations
-
Annemieke J.M.H. Verkerk , Maura Pieretti , James S. Sutcliffe , Ying-Hui Fu , Derek P.A. Kuhl , Antonio Pizzuti et al. (1991). Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome . Cell, 65(5), 905-914. Elsevier BV.OpenAlex OpenCitations
-
D.J. Hedges , P.L. Deininger (2007). Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity . Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 616(1-2), 46-59. Elsevier BV.OpenAlex OpenCitations
-
Jordan W. Smoller (2013). Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis . The Lancet, 381(9875), 1371-1379. Elsevier BV.OpenAlex OpenCitations
-
Li-Ming Xu , Jia-Rui Li , Yue Huang , Min Zhao , Xing Tang , Liping Wei (2012). AutismKB: an evidence-based knowledgebase of autism genetics . Nucleic Acids Research, 40(D1), D1016-D1022. Oxford University Press (OUP).OpenAlex OpenCitations
-
Joshua M. Schmidt , Robert T. Good , Belinda Appleton , Jayne Sherrard , Greta C. Raymant , Michael R. Bogwitz et al. (2010). Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus . PLoS Genetics, 6(6), e1000998. Public Library of Science (PLoS).OpenAlex OpenCitations
-
Jian Yuan , Mintie Pu , Zhiguo Zhang , Zhenkun Lou (2009). Histone H3-K56 acetylation is important for genomic stability in mammals . Cell Cycle, 8(11), 1747-1753. Informa UK Limited.OpenAlex
-
The International Schizophrenia Consortium , Douglas M. Ruderfer , Pamela Sklar , Shaun M. Purcell , Mark J. Daly , Edward M. Scolnick et al. (2008). Rare chromosomal deletions and duplications increase risk of schizophrenia . Nature, 455(7210), 237-241. Springer Science and Business Media LLC.OpenAlex OpenCitations
-
Adam Shlien , Uri Tabori , Christian R. Marshall , Malgorzata Pienkowska , Lars Feuk , Ana Novokmet et al. (2008). Excessive genomic DNA copy number variation in the Li–Fraumeni cancer predisposition syndrome . Proceedings of the National Academy of Sciences, 105(32), 11264-11269. National Academy of Sciences.OpenAlex OpenCitations
-
P. Flicek , M. R. Amode , D. Barrell , K. Beal , S. Brent , D. Carvalho-Silva et al. (2012). Ensembl 2012 . Nucleic Acids Research, 40(D1), D84-D90. Oxford University Press (OUP).Type: Article DOI: 10.1093/nar/gkr991OpenCitations
-
B Hoffman-Liebermann , D Liebermann , A Troutt , L H Kedes , S N Cohen (1986). Human homologs of TU transposon sequences: polypurine/polypyrimidine sequence elements that can alter DNA conformation in vitro and in vivo. Molecular and Cellular Biology, 6(11), 3632-3642. Informa UK Limited.OpenAlex OpenCitations
-
Dalila Pinto , Alistair T. Pagnamenta , Lambertus Klei , Richard Anney , Daniele Merico , Regina Regan et al. (2010). Functional impact of global rare copy number variation in autism spectrum disorders . Nature, 466(7304), 368-372. Springer Science and Business Media LLC.OpenAlex OpenCitations
-
Adam Shlien , David Malkin (2009). Copy number variations and cancer . Genome Medicine, 1(6), 62. Springer Science and Business Media LLC.OpenAlex OpenCitations
-
(2011). Mobile DNA: finding treasure in junk . Choice Reviews Online, 49(02), 49-0838-49-0838. American Library Association.OpenAlex
-
Walter Santana-Garcia , Jaime A Castro-Mondragon , Mónica Padilla-Gálvez , Nga Thi Thuy Nguyen , Ana Elizondo-Salas , Najla Ksouri et al. (2022). RSAT 2022: regulatory sequence analysis tools . Nucleic Acids Research, 50(W1), W670-W676. Oxford University Press (OUP).OpenAlex
-
Barbara Hoffman-Liebermann , Dan Liebermann , Anthony Troutt , Laurence H. Kedes , Stanley N. Cohen (1986). Human Homologs of TU Transposon Sequences: Polypurine/Polypyrimidine Sequence Elements That Can Alter DNA Conformation in Vitro and in Vivo . Molecular and Cellular Biology, 6(11), 3632-3642. Informa UK Limited.OpenAlex